Difference between revisions of "YlxY"

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(Categories containing this gene/protein)
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU16700 ylxY]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16700 ylxY]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 9.364   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 9.364   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pnpA]]'', ''[[mlpA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pnpA]]'', ''[[mlpA]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13543&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16700 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16700 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16700 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ylxY_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ylxY_context.gif]]

Revision as of 13:52, 13 May 2013

  • Description: similar to deacetylase

Gene name ylxY
Synonyms ymxI
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ylxY
MW, pI 36 kDa, 9.364
Gene length, protein length 957 bp, 319 aa
Immediate neighbours pnpA, mlpA
Sequences Protein DNA Advanced_DNA
Genetic context
YlxY context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YlxY expression.png















Categories containing this gene/protein

poorly characterized/ putative enzymes, sporulation proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU16700

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: polysaccharide deacetylase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Bjorn A Traag, Antonia Pugliese, Jonathan A Eisen, Richard Losick
Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.
J. Bacteriol.: 2013, 195(2);253-60
[PubMed:23123912] [WorldCat.org] [DOI] (I p)