Difference between revisions of "YbgB"

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* '''Regulation:'''  
* '''Regulation:'''  
** induced by glucosamine ([[gamR]]) {{PubMed|23667565}}  
** induced by glucosamine ([[gamR]]) {{PubMed|24673833,23667565}}  
* '''Regulatory mechanism:'''  
* '''Regulatory mechanism:'''  
** [[YbgA]]: transcription repression {{PubMed|23667565}}  
** [[YbgA]]: transcription repression {{PubMed|24673833,23667565}}  
* '''Additional information:'''
* '''Additional information:'''
Line 140: Line 140:
<pubmed>12897008,23667565, </pubmed>
<pubmed>12897008,24673833,23667565, </pubmed>
[[Category:Protein-coding genes]]
[[Category:Protein-coding genes]]

Revision as of 10:53, 31 March 2014

  • Description: putative immunity protein

Gene name ybgB
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ybgB
MW, pI 10 kDa, 8.47
Gene length, protein length 273 bp, 91 aa
Immediate neighbours gamR, ybgE
Sequences Protein DNA DNA_with_flanks
Genetic context
YbgB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbgB expression.png

Categories containing this gene/protein

cell envelope stress proteins (controlled by SigM, V, W, X, Y), toxins, antitoxins and immunity against toxins, membrane proteins

This gene is a member of the following regulons

SigY regulon, GamR regulon

The gene

Basic information

  • Locus tag: BSU02380

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks


Isabelle Gaugué, Jacques Oberto, Jacqueline Plumbridge
Regulation of amino sugar utilization in Bacillus subtilis by the GntR family regulators, NagR and GamR.
Mol Microbiol: 2014, 92(1);100-15
[PubMed:24673833] [WorldCat.org] [DOI] (I p)

Isabelle Gaugué, Jacques Oberto, Harald Putzer, Jacqueline Plumbridge
The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine.
PLoS One: 2013, 8(5);e63025
[PubMed:23667565] [WorldCat.org] [DOI] (I e)

Min Cao, Letal Salzberg, Ching Sung Tsai, Thorsten Mascher, Carla Bonilla, Tao Wang, Rick W Ye, Leticia Márquez-Magaña, John D Helmann
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.
J Bacteriol: 2003, 185(16);4883-90
[PubMed:12897008] [WorldCat.org] [DOI] (P p)