Difference between revisions of "YbgB"

From SubtiWiki
Jump to: navigation, search
Line 35: Line 35:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 108: Line 104:
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''ybgB'' {{PubMed|12897008}}
+
* '''Operon:'''  
 +
** ''[[ybgA]]-[[ybgB]]'' {{PubMed|23667565}}
 +
** ''[[ybgB]]'' {{PubMed|12897008}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybgB_258532_258807_1 ybgB] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybgB_258532_258807_1 ybgB] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigY]] {{PubMed|12897008}}
+
* '''[[Sigma factor]]:'''
 +
** ''[[ybgA]]'':  [[SigA]] {{PubMed|23667565}}
 +
** ''[[ybgB]]'': [[SigY]] {{PubMed|12897008}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** induced by glucosamine ([[YbgA]]) {{PubMed|23667565}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** [[YbgA]]: transcription repression {{PubMed|23667565}}
  
 
* '''Additional information:'''
 
* '''Additional information:'''
Line 140: Line 142:
 
=References=
 
=References=
  
<pubmed>12897008,, </pubmed>
+
<pubmed>12897008,23667565, </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:48, 24 May 2013

  • Description: putative immunity protein

Gene name ybgB
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ybgB
MW, pI 10 kDa, 8.47
Gene length, protein length 273 bp, 91 aa
Immediate neighbours ybgA, ybgE
Sequences Protein DNA DNA_with_flanks
Genetic context
YbgB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbgB expression.png















Categories containing this gene/protein

cell envelope stress proteins (controlled by SigM, V, W, X, Y), toxins, antitoxins and immunity against toxins, membrane proteins

This gene is a member of the following regulons

SigY regulon

The gene

Basic information

  • Locus tag: BSU02380

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Isabelle Gaugué, Jacques Oberto, Harald Putzer, Jacqueline Plumbridge
The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine.
PLoS One: 2013, 8(5);e63025
[PubMed:23667565] [WorldCat.org] [DOI] (I e)

Min Cao, Letal Salzberg, Ching Sung Tsai, Thorsten Mascher, Carla Bonilla, Tao Wang, Rick W Ye, Leticia Márquez-Magaña, John D Helmann
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.
J Bacteriol: 2003, 185(16);4883-90
[PubMed:12897008] [WorldCat.org] [DOI] (P p)