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This Page Is Currently Under Construction And Will Be Available Shortly, Please Visit Reserve Copy Page


Pathway start page small.png
legend for SubtiPathways <br/>graphical notation: click to enlarge

<big>SubtiPathways is a model of B. subtilis metabolism and regulation in SBML/SBGN (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).<br/><br/>It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding SubtiWiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.</big>

<big>Contact:</big> General Microbiology, University of Göttingen, send mail

<big>A publication describing SubtiWiki and SubtiPathways:</big> <pubmed>19959575 </pubmed>


A collection of important papers on B. subtilis metabolism can be found here


Carbon metabolism

Central carbon metabolism

Utilization of different carbon sources


Nitrogen and amino acid metabolism

Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)

Alanine, glycine, serine

Aspartate, asparagine

Cysteine, methionine


Isoleucine, valine, leucine

Lysine, threonine

Phenylalanine, tyrosine, tryptophan


Utilization of other nitrogen sources


Lipid metabolism

Fatty acid and phospholipid biosynthesis

Fatty acid degradation



Gene regulation of nucleotide metabolism

Nucleoside catabolism

Purine biosynthesis

Purine catabolism

Purine salvage pathways

Pyrimidine metabolism


Metabolism of cofactors

CoA synthesis

Folate biosynthesis


Riboflavin and FAD synthesis

Thiamin synthesis

Biotin synthesis


Other pathways

Cell wall

Murein recycling

Stress responses


Sulfate assimilation

tRNA charging

Biofilm formation

Protein secretion