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Pathway start page small.png
legend for SubtiPathways
graphical notation: click to enlarge

SubtiPathways is a model of B. subtilis metabolism and regulation in SBML/SBGN (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).

It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding SubtiWiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.

Carbon metabolism

Central carbon metabolism

Utilization of different carbon sources

Nitrogen and amino acid metabolism

Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)

Alanine, glycine, serine

Aspartate, asparagine

Cysteine, methionine


Isoleucine, valine, leucine

Lysine, threonine

Phenylalanine, tyrosine, tryptophan



Gene regulation of nucleotide metabolism

Nucleoside catabolism

Purine biosynthesis

Purine catabolism

Purine salvage pathways

Pyrimidine metabolism

Metabolism of cofactors

CoA synthesis

Folate biosynthesis


Other pathways

Cell wall

Stress responses

Sulfate assimilation

tRNA charging