Difference between revisions of "Sandbox"

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* '''Description:''' [[23S rRNA]]<br/><br/>
+
* '''Description:''' [[5S rRNA]]<br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''rrnO-23S''
+
|''rrnO-5S''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
Line 10: Line 10:
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-23S
+
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-5S
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 2928 bp
+
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 112 bp
|-|-
 
 
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnO-Ala]]'', ''[[rrnO-5S]]''
 
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnO-23S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnO-23S]]'', ''[[yaaC]]''
 +
|-
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnO-5S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 
|style="background:#FAF8CC;" align="center"|'''  '''
 
|style="background:#FAF8CC;" align="center"|'''  '''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnO-23S_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnO-5S_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 49: Line 48:
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00008]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00009]
  
 
* '''Structure:'''
 
* '''Structure:'''
Line 89: Line 88:
 
=References=
 
=References=
  
<pubmed>6312418, 20634236 </pubmed>
+
<pubmed>6312418, 11976317 20634236 </pubmed>
  
 
[[Category:Ribosomal RNA]]
 
[[Category:Ribosomal RNA]]

Revision as of 14:54, 11 November 2013

Gene name rrnO-5S
Synonyms
Essential no
Product ribosomal RNA-5S
Function translation
Gene length 112 bp
Immediate neighbours rrnO-23S, yaaC
Gene sequence (+200bp)
Genetic context
RrnO-5S context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]
  • Structure:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Hideaki Nanamiya, Makiko Sato, Kenta Masuda, Mikiko Sato, Tetsuya Wada, Shota Suzuki, Yousuke Natori, Masato Katano, Genki Akanuma, Fujio Kawamura
Bacillus subtilis mutants harbouring a single copy of the rRNA operon exhibit severe defects in growth and sporulation.
Microbiology (Reading): 2010, 156(Pt 10);2944-2952
[PubMed:20634236] [WorldCat.org] [DOI] (I p)

Ciarán Condon, Jordi Rourera, Dominique Brechemier-Baey, Harald Putzer
Ribonuclease M5 has few, if any, mRNA substrates in Bacillus subtilis.
J Bacteriol: 2002, 184(10);2845-9
[PubMed:11976317] [WorldCat.org] [DOI] (P p)

N Ogasawara, S Moriya, H Yoshikawa
Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome.
Nucleic Acids Res: 1983, 11(18);6301-18
[PubMed:6312418] [WorldCat.org] [DOI] (P p)