Difference between revisions of "GamA"

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=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
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* '''Kinetic information:''' K(M): 3.0 mM {{PubMed|14343123}}
 
* '''Kinetic information:''' K(M): 3.0 mM {{PubMed|14343123}}
  
* '''Domains:'''  
+
* '''[[Domains]]:'''  
  
 
* '''Modification:'''
 
* '''Modification:'''
  
* '''Cofactor(s):'''
+
* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
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=== Database entries ===
 
=== Database entries ===
  
* '''Structure:'''
+
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=2bkx 2BKX] (the structure of [[NagB]], 50% identity) {{PubMed|15755726}}
  
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31458 O31458]
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31458 O31458]
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=References=
 
=References=
  
<pubmed>10627040, 14343123 23667565 23876412</pubmed>
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<pubmed>10627040, 14343123 23667565 23876412 15755726 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 17:14, 27 February 2014

  • Description: glucosamine-6-phosphate deaminase

Gene name gamA
Synonyms ybfT
Essential no
Product glucosamine-6-phosphate deaminase
Function glucosamine utilization
Gene expression levels in SubtiExpress: gamA
Metabolic function and regulation of this protein in SubtiPathways:
gamA
MW, pI 27 kDa, 5.793
Gene length, protein length 747 bp, 249 aa
Immediate neighbours gamP, ybgA
Sequences Protein DNA DNA_with_flanks
Genetic context
GamA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
GamA expression.png















Categories containing this gene/protein

cell wall degradation/ turnover, utilization of specific carbon sources

This gene is a member of the following regulons

YbgA regulon

The gene

Basic information

  • Locus tag: BSU02360

Phenotypes of a mutant

  • no growth on glucosamine PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: d-glucosamine 6-phosphate + H2O = D-fructose 6-phosphate + NH3 (according to Swiss-Prot)
  • Protein family: NagB subfamily (according to Swiss-Prot)
  • Paralogous protein(s): NagB

Extended information on the protein

  • Kinetic information: K(M): 3.0 mM PubMed
  • Modification:
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References