Difference between revisions of "DacF"

From SubtiWiki
Jump to: navigation, search
Line 37: Line 37:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
+
<br/><br/>
<br/><br/><br/><br/>
 
 
 
 
 
<br/><br/><br/><br/><br/><br/>
 
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
Line 112: Line 108:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dacF_2445094_2446263_-1 dacF] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dacF_2445094_2446263_-1 dacF] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigF]] {{PubMed|15699190}}, [[SigG]]
+
* '''[[Sigma factor]]:''' [[SigF]] {{PubMed|15699190}}, [[SigG]]
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 142: Line 138:
  
 
=References=
 
=References=
'''Additional publications:''' {{PubMed|20817675,22123250}}
+
<pubmed>16497325,8936302,9864321,12107147, 20817675,22123250</pubmed>
<pubmed>16497325,8936302,9864321,12107147, </pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 21:35, 18 June 2013

Gene name dacF
Synonyms
Essential no
Product penicillin-binding protein I,
D-alanyl-D-alanine carboxypeptidase
Function carboxypeptidase
Gene expression levels in SubtiExpress: dacF
Metabolic function and regulation of this protein in SubtiPathways:
Stress
MW, pI 43 kDa, 9.912
Gene length, protein length 1167 bp, 389 aa
Immediate neighbours spoIIAA, pupG
Sequences Protein DNA DNA_with_flanks
Genetic context
DacF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
DacF expression.png















Categories containing this gene/protein

cell wall synthesis, sporulation proteins

This gene is a member of the following regulons

SigF regulon, SigG regulon, AbrB regulon

The gene

Basic information

  • Locus tag: BSU23480

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: modifies degree of cross-linking of glycan strands in peptidoglycan
  • Protein family: peptidase S11 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed by casamino acids PubMed
    • expressed during sporulation in the forespore PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References