Difference between revisions of "CsbD"

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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 186 bp, 62 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 186 bp, 62 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ureA]]'', ''[[ywmF]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywzF]]'', ''[[ywmF]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15684&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15684&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''

Revision as of 12:19, 5 December 2012

  • Description: general stress protein

Gene name csbD
Synonyms ywmG
Essential no
Product unknown
Function survival of salt stress and at low temperatures
Gene expression levels in SubtiExpress: csbD
MW, pI 6 kDa, 9.689
Gene length, protein length 186 bp, 62 aa
Immediate neighbours ywzF, ywmF
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
CsbD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
CsbD expression.png
























Categories containing this gene/protein

general stress proteins (controlled by SigB)

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU36670

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0337 (csbD) family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J. Bacteriol.: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)

Samina Akbar, Soon Youl Lee, Sharon A Boylan, Chester W Price
Two genes from Bacillus subtilis under the sole control of the general stress transcription factor sigmaB.
Microbiology (Reading): 1999, 145 ( Pt 5);1069-1078
[PubMed:10376822] [WorldCat.org] [DOI] (P p)