Difference between revisions of "AbrB regulon"

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(Activation)
(Repression)
 
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Line 22: Line 22:
 
* ''[[gntR]]''
 
* ''[[gntR]]''
 
* ''[[gntZ]]''
 
* ''[[gntZ]]''
* ''[[pksC]]-[[pksD]]-[[pksE]]-[[acpK]]-[[pksF]]-[[pksG]]-[[pksH]]-[[pksI]]-[[pksJ]]-[[pksL]]-[[pksM]]-[[pksN]]-[[pksR]]''
 
 
* ''[[rbsA]]''
 
* ''[[rbsA]]''
 
* ''[[rbsB]]''
 
* ''[[rbsB]]''
Line 33: Line 32:
 
=== Repression ===
 
=== Repression ===
 
* ''[[abrB]]''
 
* ''[[abrB]]''
* ''[[albA]]''
+
* ''[[ahpA]]-[[ahpT]]''  
* ''[[albB]]''
 
* ''[[albC]]''
 
* ''[[albD]]''
 
* ''[[albE]]''
 
* ''[[albF]]''
 
* ''[[albG]]''
 
 
* ''[[antE]]''
 
* ''[[antE]]''
 
* ''[[aprE]]''
 
* ''[[aprE]]''
Line 52: Line 45:
 
* ''[[bdhA]]''
 
* ''[[bdhA]]''
 
* ''[[besA]]''
 
* ''[[besA]]''
 +
* ''[[bmrB]]-[[bmrC]]-[[bmrD]]''
 
* ''[[bslA]]''
 
* ''[[bslA]]''
 
* ''[[cccA]]''
 
* ''[[cccA]]''
Line 74: Line 68:
 
* ''[[phrK]]''
 
* ''[[phrK]]''
 
* ''[[phy]]''
 
* ''[[phy]]''
 +
* ''[[pksC]]-[[pksD]]-[[pksE]]-[[acpK]]-[[pksF]]-[[pksG]]-[[pksH]]-[[pksI]]-[[pksJ]]-[[pksL]]-[[pksM]]-[[pksN]]-[[pksR]]''
 
* ''[[pnbA]]''
 
* ''[[pnbA]]''
 
* ''[[ppsA]]''
 
* ''[[ppsA]]''
Line 90: Line 85:
 
* ''[[rok]]''
 
* ''[[rok]]''
 
* ''[[rsiW]]''
 
* ''[[rsiW]]''
* ''[[sboA]]''
+
* ''[[sboA]]-[[sboX]]-[[albA]]-[[albB]]-[[albC]]-[[albD]]-[[albE]]-[[albF]]-[[albG]]''
* ''[[sboX]]''
 
 
* ''[[sdpA]]-[[sdpB]]-[[sdpC]]''
 
* ''[[sdpA]]-[[sdpB]]-[[sdpC]]''
 
* ''[[sdpI]]''
 
* ''[[sdpI]]''
Line 118: Line 112:
 
* ''[[sunT]]-[[bdbA]]-[[sunS]]''
 
* ''[[sunT]]-[[bdbA]]-[[sunS]]''
 
* ''[[tapA]]-[[sipW]]-[[tasA]]''
 
* ''[[tapA]]-[[sipW]]-[[tasA]]''
* ''[[tkmA]]-[[ptkA]]-[[ptpZ]]''
+
* ''[[tkmA]]-[[ptkA]]-[[ptpZ]]-[[ugd]]''
 
* ''[[tlpA]]''
 
* ''[[tlpA]]''
 
* ''[[xynC]]''
 
* ''[[xynC]]''
Line 144: Line 138:
 
* ''[[yhaP]]''
 
* ''[[yhaP]]''
 
* ''[[yhaQ]]''
 
* ''[[yhaQ]]''
* ''[[yheJ]]''
 
 
* ''[[yjcM]]''
 
* ''[[yjcM]]''
 
* ''[[yjdB]]''
 
* ''[[yjdB]]''
Line 152: Line 145:
 
* ''[[yknY]]''
 
* ''[[yknY]]''
 
* ''[[yknZ]]''
 
* ''[[yknZ]]''
* ''[[ykuU]]''
 
* ''[[ykuV]]''
 
 
* ''[[ylaE]]''
 
* ''[[ylaE]]''
 
* ''[[ylbA]]''
 
* ''[[ylbA]]''

Latest revision as of 16:55, 26 February 2016

Regulator

AbrB

Genes in this regulon

Activation

Repression

Important publications on the AbrB regulon:

Onuma Chumsakul, Kensuke Nakamura, Tetsuya Kurata, Tomoaki Sakamoto, Jon L Hobman, Naotake Ogasawara, Taku Oshima, Shu Ishikawa
High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq.
DNA Res: 2013, 20(4);325-38
[PubMed:23580539] [WorldCat.org] [DOI] (I p)

Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.
Nucleic Acids Res: 2011, 39(2);414-28
[PubMed:20817675] [WorldCat.org] [DOI] (I p)

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)


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