yybD

168

similar to GCN5-related N-acetyltransferase

locus: BSU_40680

Molecular weight: 16.42 kDa

pI: 6.16

Protein length: 147 aa

Gene length: 444 bp

function: unknown

product: unknown

essential: no

synonyms: yybD

List of homologs in different organisms, belongs to COG2153 (Galperin et al., 2021)

Gene

Coordinates: 4,181,456 → 4,181,899

Advertisement

The protein

Protein family

• UPF0039 (ElaA) family (single member, according to UniProt)

[wiki|Domains]

• [wiki|N-acetyltransferase domain] (aa 1-144) (according to UniProt)

Structure

• [PDB|1Q2Y] (YjcF, 47% identity)
• [AF|P37500]

Paralogous protein(s)

• [protein|AD0F95A25190DA7E253F4C93BC160B1EA91AAE04|yyaT], [protein|5E4C3ADF5B5D0215E9E350F16BCA57B208933606|yjcF]

Expression and Regulation

Operons

• genes: [gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]-[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]-[gene|33C3EDF3709AC835C9C50B1B7978BA7C23EC9B9E|yybC]

  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-B850 (yybD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1849 NBRP B. subtilis, Japan]
• BKE40680 (Δ[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE40680 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_TTTGACATTCATGCTTGAAT,  downstream forward: _UP4_TAGATTGTTCACAAATTTGT
• BKK40680 (Δ[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK40680 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_TTTGACATTCATGCTTGAAT,  downstream forward: _UP4_TAGATTGTTCACAAATTTGT