YtrF

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Gene name ytrF
Synonyms
Essential no
Product ABC transporter (substrate-binding lipoprotein)
Function unknown
Gene expression levels in SubtiExpress: ytrF
Interactions involving this protein in SubtInteract: YtrF
Metabolic function and regulation of this protein in SubtiPathways:
ytrF
MW, pI 48 kDa, 8.292
Gene length, protein length 1308 bp, 436 aa
Immediate neighbours bceR, ytrE
Sequences Protein DNA DNA_with_flanks
Genetic context
YtrF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YtrF expression.png

Contents




























Categories containing this gene/protein

ABC transporters, cold stress proteins, membrane proteins

This gene is a member of the following regulons

YtrA regulon

The gene

Basic information

  • Locus tag: BSU30410

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC-4 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by ramoplanin (YtrA) PubMed
    • expressed early in the stationary phase PubMed
    • induced by cold shock (7.5-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J. Bacteriol.: 2002, 184(22);6395-402
[PubMed:12399512] [WorldCat.org] (P p)

K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J. Bacteriol.: 2000, 182(19);5454-61
[PubMed:10986249] [WorldCat.org] (P p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J. Mol. Biol.: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)

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