ydiF

168

similar to [wiki|ABC transporter] (ATP-binding protein)

locus: BSU_05950

Molecular weight: 73.27 kDa

pI: 4.87

Protein length: 642 aa

Gene length: 1929 bp

function: unknown

product: [wiki|ABC transporter] (ATP-binding protein)

essential: no

synonyms: ydiF

List of homologs in different organisms, belongs to COG0488 (Galperin et al., 2021)

Gene

Coordinates: 644,528  646,456

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The protein

Protein family

• [wiki|ABC transporter superfamily] (according to UniProt)
• [wiki|ABCF ATPase subfamily] [pubmed|30597160]

[wiki|Domains]

• 2 [wiki|ABC transporter domain]s (aa 4-259, aa 327-541) (according to UniProt)

Structure

• [PDB|3J5S] (EttA from E. coli, 34% identity) [pubmed|24389465]
• [PDB|4FIN] (EttA from E. coli, 34% identity) [pubmed|24389466]
• [AF|O05519]

Paralogous protein(s)

• [protein|2F79DB15D359A127C2D833CC0465E18E1725F539|ykpA], [protein|47B644F334A0BD501E77A198A61CE0F22BAB3E5E|yfmM], [protein|F69F15198ACF8A8347C450EEC09F000EECEDEC41|yfmR]

Expression and Regulation

Operons

• genes: [gene|1F56D3275386BB54A774BFA045C09E36D1268471|ydiF]

  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-C199 (ydiF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2197 NBRP B. subtilis, Japan]
• BKE05950 ([gene|1F56D3275386BB54A774BFA045C09E36D1268471|ydiF]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05950 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATTATTTCACCTCTGCT,  downstream forward: _UP4_TAAAAAAGTCAAGCACCTCT
• BKK05950 ([gene|1F56D3275386BB54A774BFA045C09E36D1268471|ydiF]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05950 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATTATTTCACCTCTGCT,  downstream forward: _UP4_TAAAAAAGTCAAGCACCTCT

References

Reviews

• 30746819,24500425

Original Publications

• 10092453,20525796,24389466,24389465,27006457