ydgG

168

similar to transcriptional regulator ([wiki|MarR family])

locus: BSU_05640

Molecular weight: 17.13 kDa

pI: 5.62

Protein length: 152 aa

Gene length: 459 bp

function: unknown

product: unknown

essential: no

synonyms: ydgG

List of homologs in different organisms, belongs to COG1846 (Galperin et al., 2021)

Gene

Coordinates: 608,933  609,391

Advertisement

The protein

Protein family

• [wiki|MarR family]

[wiki|Domains]

• [wiki|HTH marR-type domain] (aa 3-143) (according to UniProt)

Structure

• [AF|P96705]

Expression and Regulation

Operons

• genes: [gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]-[gene|1632474628BEA113F297897D152276A1AB73BAE8|ydgH]

  description: [Pubmed|16267290]

  regulation

  • induced by DNA damage ([protein|search|LexA]) [Pubmed|16267290]

  regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|lexA]: repression, [Pubmed|16267290], in [regulon|protein:D267AF38B0CF107042326E9B8F3DD3C9C85840E4|lexA regulon]

Biological materials

Mutant

• MGNA-C160 (ydgG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2158 NBRP B. subtilis, Japan]
• CS209 (''[gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]''::''aphA3'', available in [wiki|Colin Harwood]'s and [wiki|Jörg Stülke]'s labs) [Pubmed|27197833]
• BKE05640 ([gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05640 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAATATCTTCCCCTCCTCAT,  downstream forward: _UP4_TTTAAAGGAGGAGATTCTGC
• BKK05640 ([gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05640 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAATATCTTCCCCTCCTCAT,  downstream forward: _UP4_TTTAAAGGAGGAGATTCTGC

References

• 16267290,27197833