ydeE

168

similar to transcription factor (AraC family)

locus: BSU_05170

Molecular weight: 33.10 kDa

pI: 7.22

Protein length: 290 aa

Gene length: 873 bp

function: unknown

product: unknown

essential: no

ec: null

synonyms: ydeE

List of homologs in different organisms, belongs to COG3708 (Galperin et al., 2021)

Gene

Coordinates: 563,614  564,486

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The protein

Protein family

• [wiki|AraC family]

[wiki|Domains]

• [wiki|HTH araC/xylS-type domain] (aa 8-106) (according to UniProt)

Structure

• [PDB|1XS9] (from E. coli, N-terminal [wiki|HTH araC/xylS-type domain], 33% identity) [pubmed|15458404]
• [AF|P96662]

[wiki|Localization]

• cytoplasm (according to Swiss-Prot)

Biological materials

Mutant

• MGNA-C081 (ydeE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2079 NBRP B. subtilis, Japan]
• BKE05170 ([gene|A26310839513EE348585D57E623CD5213B5C768B|ydeE]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05170 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTTATTTGGCCTCCTTTA,  downstream forward: _UP4_TAATACGTTTTTCAATCAGA
• BKK05170 ([gene|A26310839513EE348585D57E623CD5213B5C768B|ydeE]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05170 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTTATTTGGCCTCCTTTA,  downstream forward: _UP4_TAATACGTTTTTCAATCAGA

References

• 23504016,15458404