ydbP

168

similar to thioredoxin

locus: BSU_04550

Molecular weight: 12.29 kDa

pI: 4.39

Protein length: 106 aa

Gene length: 321 bp

function: unknown

product: unknown

essential: no

synonyms: ydbP

List of homologs in different organisms, belongs to COG3118 (Galperin et al., 2021)

Gene

Coordinates: 507,753  508,073

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The protein

Protein family

• [wiki|Thioredoxin family] (according to UniProt)

[wiki|Domains]

• Thioredoxin domain (aa 1-106) (according to UniProt)

Structure

• [PDB|4RUV] (from ''Staphylococcus aureus'', 57% identity)
• [AF|P96611]

Paralogous protein(s)

• [protein|4E5C84FDC8FE2FEFF47306C91ECAB7F17D3E38E9|trxA]

[wiki|Localization]

• cytoplasm (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]

  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C109 (ydbP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2107 NBRP B. subtilis, Japan]
• BKE04550 ([gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04550 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATGTCACATCTCCTTTT,  downstream forward: _UP4_ATAAGCTAATTCGTTAAACA
• BKK04550 ([gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04550 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATGTCACATCTCCTTTT,  downstream forward: _UP4_ATAAGCTAATTCGTTAAACA

References

• 10482513