YdaO riboswitch

From SubtiWiki
Jump to: navigation, search

Contents

This riboswitch controls the expression of the ydaO gene and the ktrA-ktrB operon. Gene expression is decreased upon binding of c-di-AMP to the riboswitch.

Structure of the riboswitch: 4W90

References

Fabian M Commichau, Achim Dickmanns, Jan Gundlach, Ralf Ficner, Jörg Stülke
A jack of all trades: the multiple roles of the unique essential second messenger cyclic di-AMP.
Mol. Microbiol.: 2015, 97(2);189-204
[PubMed:25869574] [WorldCat.org] [DOI] (I p)

Christopher P Jones, Adrian R Ferré-D'Amaré
Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA.
EMBO J.: 2014, 33(22);2692-703
[PubMed:25271255] [WorldCat.org] [DOI] (I p)

Aiming Ren, Dinshaw J Patel
c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets.
Nat. Chem. Biol.: 2014, 10(9);780-6
[PubMed:25086509] [WorldCat.org] [DOI] (I p)

Ang Gao, Alexander Serganov
Structural insights into recognition of c-di-AMP by the ydaO riboswitch.
Nat. Chem. Biol.: 2014, 10(9);787-92
[PubMed:25086507] [WorldCat.org] [DOI] (I p)

James W Nelson, Narasimhan Sudarsan, Kazuhiro Furukawa, Zasha Weinberg, Joy X Wang, Ronald R Breaker
Riboswitches in eubacteria sense the second messenger c-di-AMP.
Nat. Chem. Biol.: 2013, 9(12);834-9
[PubMed:24141192] [WorldCat.org] [DOI] (I p)

Peter Y Watson, Martha J Fedor
The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis.
Nat. Chem. Biol.: 2012, 8(12);963-5
[PubMed:23086297] [WorldCat.org] [DOI] (I p)

Kirsten F Block, Ming C Hammond, Ronald R Breaker
Evidence for widespread gene control function by the ydaO riboswitch candidate.
J. Bacteriol.: 2010, 192(15);3983-9
[PubMed:20511502] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Keith A Corbino, Wade C Winkler, Ali Nahvi, Maumita Mandal, Jennifer Collins, Mark Lee, Adam Roth, Narasimhan Sudarsan, Inbal Jona, J Kenneth Wickiser, Ronald R Breaker
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc. Natl. Acad. Sci. U.S.A.: 2004, 101(17);6421-6
[PubMed:15096624] [WorldCat.org] [DOI] (P p)


See also:

Back to regulons

Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox