yydA
168
similar to pseudouridine methyltransferase
locus
BSU_40230
Molecular weight
17.93 kDa
pI
9.31
function
may be involved in maturation of 23S rRNA
product
similar to pseudouridine methyltransferase
essential
no
ec
null
synonyms
yydA
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1576 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
4,134,436 4,134,915
The protein
Catalyzed reaction/ biological activity
pseudouridine1915 in 23S rRNA + S-adenosyl-L-methionine --> H+ + N3-methylpseudouridine1915 in 23S rRNA + S-adenosyl-L-homocysteine (according to UniProt)
Protein family
RNA methyltransferase rlmH family (single member, according to UniProt)
Structure
[PDB|1TO0]
[AF|Q45601]
Expression and Regulation
Operons
genes
[gene|AC2A9DC3DA569231442582A95EDB2A98BA335184|yydA]
description
null
regulatory mechanism
[protein|6740108089F13116F200C15F35C2E7561E990FEB|dnaA]: repression, [Pubmed|17932079], in [regulon|protein:6740108089F13116F200C15F35C2E7561E990FEB|dnaA regulon]
genes
[gene|660FD9F2AC911E4E70E242F14A2EA6A208F25E28|yyzF]-[gene|AC2A9DC3DA569231442582A95EDB2A98BA335184|yydA]-[gene|F30AA652362B7459D479345AB373D19FA1EAFBBF|yydB]-[gene|235399FB29FA7443D41AA9543EEB18F195503091|yydC]-[gene|1470E1E1BAE5EA5BA9831E2BCEF9B61E79450510|yydD]
description
[pubmed|22383849]
Biological materials
Mutant
MGNA-B814 (yydA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1813 NBRP B. subtilis, Japan]
References
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Time of last update: 2024-04-19 11:09:00
Author of last update: Melvin.boenninger