yycD

168

general stress protein, survival of ethanol stress

locus: BSU_40450

Molecular weight: 7.33 kDa

pI: 4.78

Protein length: 66 aa

Gene length: 201 bp

function: survival of ethanol stress

product: unknown

essential: no

synonyms: yycD

List of homologs in different organisms

Gene

Coordinates: 4,159,005  4,159,205

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The protein

Structure

• [PDB|2ZF3] (from Chromobacterium violaceum, 31% identity)
• [AF|P37480]

Expression and Regulation

Operons

• genes: [gene|4DE499A579610BD576772AED84B1F4256A2418D6|yycD]

  description: [pubmed|22383849]

  regulation

  • expression during spore [wiki|germination] is strongly reduced under conditions of osmotic stress [Pubmed|27766092]

  sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB]: sigma factor, [Pubmed|15805528], in [regulon|protein:580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB regulon]

Biological materials

Mutant

• MGNA-B830 (yycD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1829 NBRP B. subtilis, Japan]
• BKE40450 ([gene|4DE499A579610BD576772AED84B1F4256A2418D6|yycD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE40450 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCTTTCATTCCTCCCTTA,  downstream forward: _UP4_TAATGAATGAAAGCCTTCGC
• BKK40450 ([gene|4DE499A579610BD576772AED84B1F4256A2418D6|yycD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK40450 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCTTTCATTCCTCCCTTA,  downstream forward: _UP4_TAATGAATGAAAGCCTTCGC

References

• 12823818,15805528,27766092