Difference between revisions of "YybP"

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(References)
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=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''yybP'' (according to [http://dbtbs.hgc.jp/COG/prom/yybP.html DBTBS])
+
* '''Operon:''' ''yybP'' {{PubMed|25794618}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yybP_4169166_4169612_-1 yybP] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yybP_4169166_4169612_-1 yybP] {{PubMed|22383849}}
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* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** induced in the presence of Mn<sup>2+</sup> ([[yybP-ykoY motif]]) {{PubMed|25794618}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** [[yybP-ykoY motif]], riboswitch, antitermination in the presence of the ligand Mn<sup>2+</sup> {{PubMed|25794618}}
  
 
* '''Additional information:'''
 
* '''Additional information:'''

Revision as of 17:39, 26 March 2015

  • Description: unknown

Gene name yybP
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yybP
MW, pI 15 kDa, 4.24
Gene length, protein length 444 bp, 148 aa
Immediate neighbours ppaC, yybO
Sequences Protein DNA DNA_with_flanks
Genetic context
YybP context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YybP expression.png















Categories containing this gene/protein

membrane proteins, sporulation proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU40560

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ian R Price, Ahmed Gaballa, Fang Ding, John D Helmann, Ailong Ke
Mn(2+)-sensing mechanisms of yybP-ykoY orphan riboswitches.
Mol Cell: 2015, 57(6);1110-1123
[PubMed:25794619] [WorldCat.org] [DOI] (I p)

Michael Dambach, Melissa Sandoval, Taylor B Updegrove, Vivek Anantharaman, L Aravind, Lauren S Waters, Gisela Storz
The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element.
Mol Cell: 2015, 57(6);1099-1109
[PubMed:25794618] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Keith A Corbino, Wade C Winkler, Ali Nahvi, Maumita Mandal, Jennifer Collins, Mark Lee, Adam Roth, Narasimhan Sudarsan, Inbal Jona, J Kenneth Wickiser, Ronald R Breaker
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc Natl Acad Sci U S A: 2004, 101(17);6421-6
[PubMed:15096624] [WorldCat.org] [DOI] (P p)