Difference between revisions of "YxjH"

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(Database entries)
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU38950&redirect=T BSU38950]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxjH.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxjH.html]
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU38950&redirect=T BSU38950]
  
 
* '''Structure:''' [http://pdb.org/pdb/explore/explore.do?structureId=1ypx 1YPX] (the enzyme from ''Listeria monocytogenes'', 50% identity)
 
* '''Structure:''' [http://pdb.org/pdb/explore/explore.do?structureId=1ypx 1YPX] (the enzyme from ''Listeria monocytogenes'', 50% identity)

Revision as of 15:10, 2 April 2014

  • Description: putative methionine synthase

Gene name yxjH
Synonyms
Essential no
Product putative methionine synthase
Function unknown
Gene expression levels in SubtiExpress: yxjH
Metabolic function and regulation of this protein in SubtiPathways:
yxjH
MW, pI 38 kDa, 5.085
Gene length, protein length 1020 bp, 340 aa
Immediate neighbours yxjI, yxjG
Sequences Protein DNA DNA_with_flanks
Genetic context
YxjH context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YxjH expression.png




























Categories containing this gene/protein

biosynthesis/ acquisition of amino acids

This gene is a member of the following regulons

S-box

The gene

Basic information

  • Locus tag: BSU38950

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): YxjG

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:

Database entries

  • Structure: 1YPX (the enzyme from Listeria monocytogenes, 50% identity)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
    • S-box: transcription termination/ antitermination, the S-box riboswitch binds S-adenosylmethionine resulting in termination PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ana Gutiérrez-Preciado, Tina M Henkin, Frank J Grundy, Charles Yanofsky, Enrique Merino
Biochemical features and functional implications of the RNA-based T-box regulatory mechanism.
Microbiol Mol Biol Rev: 2009, 73(1);36-61
[PubMed:19258532] [WorldCat.org] [DOI] (I p)

Jerneja Tomsic, Brooke A McDaniel, Frank J Grundy, Tina M Henkin
Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro.
J Bacteriol: 2008, 190(3);823-33
[PubMed:18039762] [WorldCat.org] [DOI] (I p)

Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147] [WorldCat.org] [DOI] (P p)

F J Grundy, T M Henkin
The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria.
Mol Microbiol: 1998, 30(4);737-49
[PubMed:10094622] [WorldCat.org] [DOI] (P p)