Difference between revisions of "YxeK"

From SubtiWiki
Jump to: navigation, search
(Categories containing this gene/protein)
Line 14: Line 14:
 
|style="background:#ABCDEF;" align="center"|'''Function''' || sulphur metabolism
 
|style="background:#ABCDEF;" align="center"|'''Function''' || sulphur metabolism
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU39520 yxeK]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39520 yxeK]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 49 kDa, 5.668   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 49 kDa, 5.668   
Line 22: Line 22:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxeL]]'', ''[[yxeJ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxeL]]'', ''[[yxeJ]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15988&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39520 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yxeK_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yxeK_context.gif]]

Revision as of 14:15, 13 May 2013

  • Description: similar to monooxygenase

Gene name yxeK
Synonyms
Essential no
Product unknown
Function sulphur metabolism
Gene expression levels in SubtiExpress: yxeK
MW, pI 49 kDa, 5.668
Gene length, protein length 1323 bp, 441 aa
Immediate neighbours yxeL, yxeJ
Sequences Protein DNA Advanced_DNA
Genetic context
YxeK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YxeK expression.png

























Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

CymR regulon

The gene

Basic information

  • Locus tag: BSU39520

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ntaA/snaA/soxA(dszA) monooxygenase family (according to Swiss-Prot)
  • Paralogous protein(s): YtnJ

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed in the presence of cysteine (CymR) PubMed
  • Regulatory mechanism:
  • Additional information:
    • the amount of the mRNA is substantially decreased upon depletion of RNase Y PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 81(6): 1459-1473. 
PubMed:21815947