Difference between revisions of "YxbD"

From SubtiWiki
Jump to: navigation, search
Line 128: Line 128:
  
 
* '''Additional information:'''
 
* '''Additional information:'''
 +
** number of protein molecules per cell (minimal medium with glucose and ammonium): 343 {{PubMed|24696501}}
  
 
=Biological materials =
 
=Biological materials =

Revision as of 10:07, 17 April 2014

  • Description: unknown

Gene name yxbD
Synonyms yxaR
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yxbD
MW, pI 17 kDa, 4.896
Gene length, protein length 477 bp, 159 aa
Immediate neighbours aldX, yxbC
Sequences Protein DNA DNA_with_flanks
Genetic context
YxbD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YxbD expression.png
























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

AbrB regulon, CodY regulon, Spo0A regulon

The gene

Basic information

  • Locus tag: BSU39870

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • expressed under conditions that trigger sporulation (Spo0A) PubMed
    • repressed during logrithmic growth (AbrB) PubMed
  • Regulatory mechanism:
    • Spo0A: transcription activation PubMed
    • repressed during growth in the presence of branched chain amino acids (CodY) PubMed
    • AbrB: transcription repression PubMed
  • Additional information:
    • number of protein molecules per cell (minimal medium with glucose and ammonium): 343 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Mélanie A Hamon, Nicola R Stanley, Robert A Britton, Alan D Grossman, Beth A Lazazzera
Identification of AbrB-regulated genes involved in biofilm formation by Bacillus subtilis.
Mol Microbiol: 2004, 52(3);847-60
[PubMed:15101989] [WorldCat.org] [DOI] (P p)

Virginie Molle, Masaya Fujita, Shane T Jensen, Patrick Eichenberger, José E González-Pastor, Jun S Liu, Richard Losick
The Spo0A regulon of Bacillus subtilis.
Mol Microbiol: 2003, 50(5);1683-701
[PubMed:14651647] [WorldCat.org] [DOI] (P p)

Virginie Molle, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.
J Bacteriol: 2003, 185(6);1911-22
[PubMed:12618455] [WorldCat.org] [DOI] (P p)

Ken-Ichi Yoshida, Izumi Ishio, Eishi Nagakawa, Yoshiyuki Yamamoto, Mami Yamamoto, Yasutaro Fujita
Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome.
Microbiology (Reading): 2000, 146 ( Pt 3);573-579
[PubMed:10746760] [WorldCat.org] [DOI] (P p)