Difference between revisions of "YxaC"

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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
** ''yxaKC'' mutant is delayed in pellicle formation (Chen et al)
+
** ''yxaKC'' mutant is delayed in pellicle formation {{PubMed|26060272}}
** ''ywbHG''-''yxaKC''-''ysbAB'' triple mutant is severely delayed in pellicle formation (Chen et al)
+
** ''ywbHG''-''yxaKC''-''ysbAB'' triple mutant is severely delayed in pellicle formation {{PubMed|26060272}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 121: Line 121:
 
* '''Regulation:'''  
 
* '''Regulation:'''  
  
** ''yxaKC'' expression is induced by acetate (Chen et al)
+
** ''yxaKC'' expression is induced by acetate {{PubMed|26060272}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
Line 146: Line 146:
  
 
=References=
 
=References=
<pubmed> 10746760 </pubmed>  
+
<pubmed> 26060272 10746760 </pubmed>  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 14:12, 11 June 2015

  • Description: unknown

Gene name yxaC
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yxaC
MW, pI 25 kDa, 9.118
Gene length, protein length 690 bp, 230 aa
Immediate neighbours yxzK, yxaB
Sequences Protein DNA DNA_with_flanks
Genetic context
YxaC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YxaC expression.png
























Categories containing this gene/protein

membrane proteins, proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU40022

Phenotypes of a mutant

    • yxaKC mutant is delayed in pellicle formation PubMed
    • ywbHG-yxaKC-ysbAB triple mutant is severely delayed in pellicle formation PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • yxaKC expression is induced by acetate PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Yun Chen, Kevin Gozzi, Fang Yan, Yunrong Chai
Acetic Acid Acts as a Volatile Signal To Stimulate Bacterial Biofilm Formation.
mBio: 2015, 6(3);e00392
[PubMed:26060272] [WorldCat.org] [DOI] (I e)

Ken-Ichi Yoshida, Izumi Ishio, Eishi Nagakawa, Yoshiyuki Yamamoto, Mami Yamamoto, Yasutaro Fujita
Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome.
Microbiology (Reading): 2000, 146 ( Pt 3);573-579
[PubMed:10746760] [WorldCat.org] [DOI] (P p)