Difference between revisions of "YwpB"
| Line 57: | Line 57: | ||
* essential {{PubMed|23109554}} | * essential {{PubMed|23109554}} | ||
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU36370&redirect=T BSU36370] | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
| Line 94: | Line 95: | ||
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU36370&redirect=T BSU36370] | ||
* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=3D6X 3D6X] (from ''Campylobacter jejuni'', 45% identity, 67% similarity) {{PubMed|19280690}} | * '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=3D6X 3D6X] (from ''Campylobacter jejuni'', 45% identity, 67% similarity) {{PubMed|19280690}} | ||
Revision as of 16:00, 2 April 2014
- Description: β-hydroxyacyl-(acyl carrier protein) dehydratase
| Gene name | ywpB |
| Synonyms | fabZ |
| Essential | yes PubMed |
| Product | β-hydroxyacyl-ACP dehydratase |
| Function | fatty acid biosynthesis |
| Gene expression levels in SubtiExpress: ywpB | |
| Metabolic function and regulation of this protein in SubtiPathways: ywpB | |
| MW, pI | 14 kDa, 9.36 |
| Gene length, protein length | 396 bp, 132 aa |
| Immediate neighbours | mscL, rapD |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
biosynthesis of lipids, essential genes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU36370
Phenotypes of a mutant
- essential PubMed
Database entries
- BsubCyc: BSU36370
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: FabZ subfamily (according to Swiss-Prot)
- Paralogous protein(s): YcsD
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- BsubCyc: BSU36370
- UniProt: P94584
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Andrew S Kirkpatrick, Takeshi Yokoyama, Kyoung-Jae Choi, Hye-Jeong Yeo
Campylobacter jejuni fatty acid synthase II: structural and functional analysis of beta-hydroxyacyl-ACP dehydratase (FabZ).
Biochem Biophys Res Commun: 2009, 380(2);407-12
[PubMed:19280690]
[WorldCat.org]
[DOI]
(I p)
Yasutaro Fujita, Hiroshi Matsuoka, Kazutake Hirooka
Regulation of fatty acid metabolism in bacteria.
Mol Microbiol: 2007, 66(4);829-39
[PubMed:17919287]
[WorldCat.org]
[DOI]
(P p)
