Difference between revisions of "YwlF"

From SubtiWiki
Jump to: navigation, search
(Extended information on the protein)
Line 60: Line 60:
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===
  
* '''Kinetic information:'''
+
* '''Kinetic information:''' Reversible Mass Action Kinetics [http://www.ncbi.nlm.nih.gov/sites/entrez/956158 PubMed] [http://www.ncbi.nlm.nih.gov/sites/entrez/7144591 PubMed]
  
 
* '''Domains:'''  
 
* '''Domains:'''  
Line 68: Line 68:
 
* '''Cofactor(s):'''
 
* '''Cofactor(s):'''
  
* '''Effectors of protein activity:''' inhibited by 6-phosphogluconate and AMP [http://www.ncbi.nlm.nih.gov/sites/entrez/7144591 PubMed]
+
* '''Effectors of protein activity:'''
 +
** Inhibited by 6-phosphogluconate and AMP [http://www.ncbi.nlm.nih.gov/sites/entrez/7144591 PubMed]
 +
** Inhibited by divalent ions such as Ag2+, Mg2+, Co2+ and Zn2+ [http://www.ncbi.nlm.nih.gov/sites/entrez/956158 PubMed]
 +
** Activated by EDTA and 2-mercaptoethanol [http://www.ncbi.nlm.nih.gov/sites/entrez/7144591 PubMed]
  
 
* '''Interactions:'''
 
* '''Interactions:'''

Revision as of 14:55, 10 June 2009

  • Description: ribose-5-phosphate isomerase

Gene name ywlF
Synonyms ipc-32d
Essential no
Product ribose-5-phosphate isomerase
Function pentose phosphate pathway
MW, pI 16 kDa, 5.416
Gene length, protein length 447 bp, 149 aa
Immediate neighbours ywlG, ywlE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YwlF context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU36920

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: lacAB/rpiB family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information: Reversible Mass Action Kinetics PubMed PubMed
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
    • Inhibited by 6-phosphogluconate and AMP PubMed
    • Inhibited by divalent ions such as Ag2+, Mg2+, Co2+ and Zn2+ PubMed
    • Activated by EDTA and 2-mercaptoethanol PubMed
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Shuobo Shi, Tao Chen, Zhigang Zhang, Xun Chen, Xueming Zhao
Transcriptome analysis guided metabolic engineering of Bacillus subtilis for riboflavin production.
Metab Eng: 2009, 11(4-5);243-52
[PubMed:19446032] [WorldCat.org] [DOI] (I p)

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed