Difference between revisions of "YwdK"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU37930&redirect=T BSU37930]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ywdIJK.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ywdIJK.html]
Line 93: Line 94:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU37930&redirect=T BSU37930]
  
 
* '''Structure:'''
 
* '''Structure:'''

Revision as of 15:06, 2 April 2014

  • Description: unknown

Gene name ywdK
Synonyms ipa-61d
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ywdK
MW, pI 11 kDa, 9.428
Gene length, protein length 339 bp, 113 aa
Immediate neighbours gerQ, ywdJ
Sequences Protein DNA DNA_with_flanks
Genetic context
YwdK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwdK expression.png
























Categories containing this gene/protein

membrane proteins

This gene is a member of the following regulons

TnrA regulon

The gene

Basic information

  • Locus tag: BSU37930

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0382 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • repressed in the absence of good nitrogen sources (glutamine or ammonium) (TnrA) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ken-ichi Yoshida, Hirotake Yamaguchi, Masaki Kinehara, Yo-hei Ohki, Yoshiko Nakaura, Yasutaro Fujita
Identification of additional TnrA-regulated genes of Bacillus subtilis associated with a TnrA box.
Mol Microbiol: 2003, 49(1);157-65
[PubMed:12823818] [WorldCat.org] [DOI] (P p)