Difference between revisions of "YwcA"

From SubtiWiki
Jump to: navigation, search
(Phenotypes of a mutant)
Line 55: Line 55:
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
** ''ywcBA'' mutant has slightly reduced acetic acid transport (Chen et al)
+
** ''ywcBA'' mutant has slightly reduced acetic acid transport {{PubMed|26060272}}
** ''ywcBA'' mutant shows earlier pellicle biofilm formation (Chen et al)
+
** ''ywcBA'' mutant shows earlier pellicle biofilm formation {{PubMed|26060272}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 75: Line 75:
  
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
** the protein is involved in acetate transport (Chen et al)
+
** the protein is involved in acetate transport {{PubMed|26060272}}
 
** the protein is not involved in proline transport  {{PubMed|24142252}}
 
** the protein is not involved in proline transport  {{PubMed|24142252}}
  

Revision as of 14:07, 11 June 2015

  • Description: similar to Na+-dependent symport

Gene name ywcA
Synonyms ipa-31r
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ywcA
Metabolic function and regulation of this protein in SubtiPathways:
YwcA
MW, pI 54 kDa, 7.201
Gene length, protein length 1548 bp, 516 aa
Immediate neighbours ywcB, ywbO
Sequences Protein DNA DNA_with_flanks
Genetic context
YwcA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwcA expression.png















Categories containing this gene/protein

transporters/ other, membrane proteins, sporulation proteins

This gene is a member of the following regulons

SigE regulon

The gene

Basic information

  • Locus tag: BSU38240

Phenotypes of a mutant

    • ywcBA mutant has slightly reduced acetic acid transport PubMed
    • ywcBA mutant shows earlier pellicle biofilm formation PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • the protein is involved in acetate transport PubMed
    • the protein is not involved in proline transport PubMed
  • Protein family: solute:sodium symporter family (SSS family)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: expressed during sporulation (SigE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References