Difference between revisions of "YwbO"
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 600 bp, 200 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 600 bp, 200 aa | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywcA]]'', ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywcA]]'', ''[[efeB]]'' |
|- | |- | ||
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38250 DNA_with_flanks] | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38250 DNA_with_flanks] | ||
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* '''Operon:''' | * '''Operon:''' | ||
** ''ywbO'' {{PubMed|9353933}} | ** ''ywbO'' {{PubMed|9353933}} | ||
| − | ** ''[[ | + | ** ''[[efeB]]-[[ywbO]]'' {{PubMed|18179421}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywbO_3925797_3926399_-1 ywbO] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywbO_3925797_3926399_-1 ywbO] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
| − | ** ''[[ | + | ** ''[[efeB]]'': [[SigM]] {{PubMed|18179421}}, [[SigX]], [[SigW]] {{PubMed|9683469}} |
* '''Regulation:''' | * '''Regulation:''' | ||
Revision as of 16:14, 21 June 2013
- Description: unknown
| Gene name | ywbO |
| Synonyms | ipa-30d |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ywbO | |
| MW, pI | 22 kDa, 4.641 |
| Gene length, protein length | 600 bp, 200 aa |
| Immediate neighbours | ywcA, efeB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
cell envelope stress proteins (controlled by SigM, V, W, X, Y)
This gene is a member of the following regulons
SigM regulon, SigW regulon, SigX regulon
The gene
Basic information
- Locus tag: BSU38250
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P39598
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Warawan Eiamphungporn, John D Helmann
The Bacillus subtilis sigma(M) regulon and its contribution to cell envelope stress responses.
Mol Microbiol: 2008, 67(4);830-48
[PubMed:18179421]
[WorldCat.org]
[DOI]
(P p)
X Huang, K L Fredrick, J D Helmann
Promoter recognition by Bacillus subtilis sigmaW: autoregulation and partial overlap with the sigmaX regulon.
J Bacteriol: 1998, 180(15);3765-70
[PubMed:9683469]
[WorldCat.org]
[DOI]
(P p)
E Presecan, I Moszer, L Boursier, H Cruz Ramos, V de la Fuente, M-F Hullo, C Lelong, S Schleich, A Sekowska, B H Song, G Villani, F Kunst, A Danchin, P Glaser
The Bacillus subtilis genome from gerBC (311 degrees) to licR (334 degrees).
Microbiology (Reading): 1997, 143 ( Pt 10);3313-3328
[PubMed:9353933]
[WorldCat.org]
[DOI]
(P p)
