Difference between revisions of "YwbA"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU38390 ywbA]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38390 ywbA]
 
|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 7.889   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 7.889   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywbB]]'', ''[[epr]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywbB]]'', ''[[epr]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15865&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38390 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38390 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38390 Advanced_DNA]
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ywbA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ywbA_context.gif]]

Revision as of 14:11, 13 May 2013

  • Description: PTS, putative EIIC component

Gene name ywbA
Synonyms ipa-16d
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ywbA
MW, pI 47 kDa, 7.889
Gene length, protein length 1332 bp, 444 aa
Immediate neighbours ywbB, epr
Sequences Protein DNA Advanced_DNA
Genetic context
YwbA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwbA expression.png
























Categories containing this gene/protein

phosphotransferase systems, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU38390

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: PTS permease, lactose permease (Lac) family PubMed

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure: 3QNQ (EIIC component of diacetylchitobiose specific PTS from Bacillus cereus; 60% identity, 87% similarity) PubMed
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Jonathan Reizer, Steffi Bachem, Aiala Reizer, Maryvonne Arnaud, Milton H Saier, Jörg Stülke
Novel phosphotransferase system genes revealed by genome analysis - the complete complement of PTS proteins encoded within the genome of Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 12);3419-3429
[PubMed:10627040] [WorldCat.org] [DOI] (P p)