Difference between revisions of "YvyD"

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=== Basic information ===
 
=== Basic information ===
  
* '''Locus tag:'''
+
* '''Locus tag:''' BSU35310
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
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* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P28368 P28368]
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P28368 P28368]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU35310 BSU35310]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU35310]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''

Revision as of 13:21, 3 June 2009

  • Description: general stress protein, similar to Sigma-54 (SigL) modulating factor of gram-negative bacteria

Gene name yvyD
Synonyms yviI
Essential no
Product unknown
Function required for survival at low temperatures
MW, pI 21 kDa, 5.184
Gene length, protein length 567 bp, 189 aa
Immediate neighbours secA, fliT
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YvyD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU35310

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ribosomal protein S30Ae family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation: repressed by casamino acids PubMed , induced by stress (SigB) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Mäder et al. (2002) Transcriptome and Proteome Analysis of Bacillus subtilis Gene Expression Modulated by Amino Acid Availability. J. Bacteriol 184: 1844288-4295 PubMed
  2. Höper et al. (2005) Comprehensive Characterization of the Contribution of Individual SigB-Dependent General Stress Genes to Stress Resistance of Bacillus subtilis. J. Bact. 187: 2810-2826 PubMed
  3. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed