hpf

hpf
168

general stress protein, required for ribosome dimerization in the stationary phase, protects essential ribosomal proteins ([protein|F1969E4C7BAAF70BCBE570F58350C12A3E417539|S2] and [protein|E7F4E01A6005C8469EAC64E8DFED96D0F29791A9|S3])

locus
BSU_35310
Molecular weight
21.83 kDa
pI
5.18
Protein length
Gene length
function
protection of essential ribosomal proteins ([protein|F1969E4C7BAAF70BCBE570F58350C12A3E417539|S2] and [protein|E7F4E01A6005C8469EAC64E8DFED96D0F29791A9|S3])
product
ribosome hibernation promoting factor
essential
no
synonyms
hpf, yviI, yvyD

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1544 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,631,003  3,631,572
Phenotypes of a mutant
the mutant is cold-sensitive
delayed recovery from stationary phase and delayed [wiki|germination] [Pubmed|26743942]
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The protein
Catalyzed reaction/ biological activity
[protein|search|Hpf ]binds the 30S subunits of hibernating [wiki|ribosome]s, dimerization of [protein|search|Hpf ]results in 100S [wiki|ribosome ]dimer formation [pubmed|28468753,26743942]
Protein family
HPF/YfiA ribosome-associated protein family (single member, according to UniProt)
Structure
[PDB|2YWQ] (N-terminal domain, from ''Thermus thermophilus'', 32% identity)
[PDB|3K2T] (C-terminal domain, from ''Listeria monocytogenes'', 75% identity)
[PDB|5NJT] (Hpf as part of the 100S [wiki|ribosome]) [pubmed|28468753]
[AF|P28368]
Modification
phosphorylated on Arg-6 [Pubmed|22517742]
[wiki|Localization]
cytoplasm (according to UniProt)
Expression and Regulation
Operons
genes
[gene|4DBF4635B5C5A7541E8F97440D139DAA02547B99|yvyC]-[gene|C6012DEA301DF5B2DDD7E673A736BD3E5163F209|fliD]-[gene|4882FAD988FEDD0E72E4CAFB10C8DE61DDAC23B0|fliS]-[gene|4DE156D248FAF7DE3ED9AC35F006B5319A3C1BDA|fliT]-[gene|A6E7212D159F076F5D26F9C02F340B40C3667623|smiA]-[gene|06FEA5F205B40DD5CF8D9F1328E940D4543F4741|S1350]-[gene|37B8B671B84266A7D65B90A9077A0DFF458D1851|hpf]
description
[pubmed|22383849]
sigma factors
[protein|7024E4162A6D827069F882FDEACA696EBC05DD40|sigD]: sigma factor, [Pubmed|26577401], in [regulon|protein:7024E4162A6D827069F882FDEACA696EBC05DD40|sigD regulon]
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[gene|4DBF4635B5C5A7541E8F97440D139DAA02547B99|yvyC]->[gene|37B8B671B84266A7D65B90A9077A0DFF458D1851|hpf]

2024-02-08 11:55:16

Jstuelk

64

e3ca620c52dfbad7e213327c6d00bc708a17de60

8A78945BE9E5D0307404BC35D532282B9C61997C

genes
[gene|37B8B671B84266A7D65B90A9077A0DFF458D1851|hpf]
description
[Pubmed|9852014]
regulation
expressed in the stationary phase [Pubmed|26743942]
regulatory mechanism
[protein|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP]: activation, [Pubmed|25666134], in [regulon|protein:638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP regulon]
sigma factors
[protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB]: sigma factor, [Pubmed|9852014,15805528], in [regulon|protein:580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB regulon]
[protein|DC3449D5F195E5C2E9E14FEC95396C8F1FDF73B4|sigH]: sigma factor, [Pubmed|9852014], in [regulon|protein:DC3449D5F195E5C2E9E14FEC95396C8F1FDF73B4|sigH regulon]
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[gene|37B8B671B84266A7D65B90A9077A0DFF458D1851|hpf]

2024-01-26 05:34:25

ghost

31

ff2be4c48a1589a5efe0935c849474ba3178f026

981F17CD0A259AA7DDA858A2058F3F74F777952D

Biological materials
Mutant
BKE35310 ([gene|37B8B671B84266A7D65B90A9077A0DFF458D1851|hpf]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE35310 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCAAAGAACGCCTCCCTT,  downstream forward: _UP4_TAATGAAGAGAAGCCTTCCG
BKK35310 ([gene|37B8B671B84266A7D65B90A9077A0DFF458D1851|hpf]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK35310 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCAAAGAACGCCTCCCTT,  downstream forward: _UP4_TAATGAAGAGAAGCCTTCCG
GP2598 ([gene|37B8B671B84266A7D65B90A9077A0DFF458D1851|hpf]::tet comIQ12L) (in DK1042) available in [wiki|Jörg Stülke]'s lab
References
36815589,22517742,26743942,9852014,15805528,25666134,12107147,23663662,28468753,28468753,30619132,31604775,32123037

37B8B671B84266A7D65B90A9077A0DFF458D1851

Page visits: 5236

Time of last update: 2024-03-28 10:09:31

Author of last update: Jstuelk