Difference between revisions of "YvrL"

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(Extended information on the protein)
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* '''Operon:''' ''[[oxdC]]-[[yvrL]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
 
* '''Operon:''' ''[[oxdC]]-[[yvrL]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
  
* '''[[Sigma factor]]:''' [[YvrI]]-[[YvrH]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvrL_3411684_3412094_1 yvrL] {{PubMed|22383849}}
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* '''Sigma factor:''' [[YvrI]]-[[YvrH]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
  
 
* '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
 
* '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]

Revision as of 06:25, 17 April 2012

Gene name yvrL
Synonyms
Essential no
Product anti-Sig(YvrI-YvrHa)
Function control of Sig(YvrI-YvrHa) activity
MW, pI 15 kDa, 9.427
Gene length, protein length 408 bp, 136 aa
Immediate neighbours oxdC, yvrN
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YvrL context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

sigma factors and their control, acid stress proteins (controlled by YvrI-YvrHa), membrane proteins

This gene is a member of the following regulons

YvrI-YvrHa regulon

The gene

Basic information

  • Locus tag: BSU33250

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: induced by acidic growth conditions PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

John Helmann, Cornell University, USA Homepage

Your additional remarks

References

Shawn R MacLellan, John D Helmann, Haike Antelmann
The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis.
J Bacteriol: 2009, 191(3);931-9
[PubMed:19047353] [WorldCat.org] [DOI] (I p)

Shawn R MacLellan, Tina Wecke, John D Helmann
A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis.
Mol Microbiol: 2008, 69(4);954-67
[PubMed:18573182] [WorldCat.org] [DOI] (I p)