Difference between revisions of "YvrJ"
| Line 99: | Line 99: | ||
* '''Operon:''' ''[[yvrJ]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | * '''Operon:''' ''[[yvrJ]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvrJ_3410007_3410345_1 yvrJ] {{PubMed|22383849}} |
| + | |||
| + | * '''Sigma factor:''' [[YvrI]]-[[YvrHa]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | ||
* '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | * '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | ||
Revision as of 06:25, 17 April 2012
- Description: may be involved in response to acid stress
| Gene name | yvrJ |
| Synonyms | |
| Essential | |
| Product | unknown |
| Function | unknown |
| MW, pI | 13 kDa, 9.098 |
| Gene length, protein length | 336 bp, 112 aa |
| Immediate neighbours | yvrI, oxdC |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
acid stress proteins (controlled by YvrI-YvrHa)
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU33239
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: no entry
Additional information
This gene was only recently identified. PubMed
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: C0H3R5
- KEGG entry: no entry
- E.C. number:
Additional information
Expression and regulation
- Regulation: induced by acidic growth conditions PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
John Helmann, Cornell University, USA Homepage
Your additional remarks
References
Shawn R MacLellan, John D Helmann, Haike Antelmann
The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis.
J Bacteriol: 2009, 191(3);931-9
[PubMed:19047353]
[WorldCat.org]
[DOI]
(I p)
Shawn R MacLellan, Tina Wecke, John D Helmann
A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis.
Mol Microbiol: 2008, 69(4);954-67
[PubMed:18573182]
[WorldCat.org]
[DOI]
(I p)
