Difference between revisions of "YvdE"

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|style="background:#ABCDEF;" align="center"|'''Function''' || probably regulation of starch and maltodextrin utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || probably regulation of starch and maltodextrin utilization
 
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|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU34630 yvdE]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU34630 yvdE]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 35 kDa, 7.093   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 35 kDa, 7.093   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvdF]]'', ''[[yvdD]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvdF]]'', ''[[yvdD]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15468&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU34630 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU34630 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU34630 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yvdE_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvdE_context.gif]]

Revision as of 13:56, 13 May 2013

  • Description: similar to transcriptional regulator (LacI family), probably regulator of starch and maltodextrin utilization

Gene name yvdE
Synonyms mdxR
Essential no
Product transcriptional regulator (LacI family)
Function probably regulation of starch and maltodextrin utilization
Gene expression levels in SubtiExpress: yvdE
MW, pI 35 kDa, 7.093
Gene length, protein length 948 bp, 316 aa
Immediate neighbours yvdF, yvdD
Sequences Protein DNA Advanced_DNA
Genetic context
YvdE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YvdE expression.png
























Categories containing this gene/protein

utilization of specific carbon sources, transcription factors and their control

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU34630

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References