yvdA

yvdA
168

similar to carbonic anhydrase

locus
BSU_34670
Molecular weight
21.57 kDa
pI
6.88
Protein length
Gene length
function
unknown
product
unknown
essential
no
synonyms
yvdA

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0288 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,561,590 → 3,562,183
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The protein
Catalyzed reaction/ biological activity
H+ + hydrogencarbonate --> CO2 + H2O (according to UniProt)
Protein family
beta-class carbonic anhydrase family (with [protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF] and [protein|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB], according to UniProt)
Structure
[PDB|1G5C] (from Methanobacterium thermoautotrophicum 40% identity) [pubmed|11096105]
[AF|O06983]
Paralogous protein(s)
[protein|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]
[protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF], Array
Expression and Regulation
Operons
genes
[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]-[gene|7028580E25DD6C1D49A14F29DDCC02012F94FED7|yvdB]
description
[Pubmed|22383849]
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[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]→[gene|7028580E25DD6C1D49A14F29DDCC02012F94FED7|yvdB]

2024-03-26 11:08:31

ghost

40

5d9da88d8e930fa711790a9542ccf5fa01a24d57

1474ABC4BF523C92AC56F09343483066D6B1C7A4

Biological materials
Mutant
MGNA-B632 (yvdA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1631 NBRP B. subtilis, Japan]
BKE34670 (Δ[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE34670 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCTCCCATCCATATGATT,  downstream forward: _UP4_TCATAAGGGAGGTTATAACA
BKK34670 (Δ[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK34670 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCTCCCATCCATATGATT,  downstream forward: _UP4_TCATAAGGGAGGTTATAACA
References
22383849,11096105

E00889289B07BE78CC0C8E0962A55C3B14871E00

Page visits: 1388

Time of last update: 2024-03-29 06:32:01

Author of last update: Melvin.boenninger