Difference between revisions of "YvaM"

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(Expression and regulation)
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''yvaM'' (according to [http://dbtbs.hgc.jp/COG/prom/yvaM.html DBTBS])
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
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** [[RghR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
 
** [[RghR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
  
* '''Additional information:'''  
+
* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 10:17, 29 December 2009

  • Description: similar to hydrolase

Gene name yvaM
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 29 kDa, 8.995
Gene length, protein length 768 bp, 256 aa
Immediate neighbours secG, yvzC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YvaM context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU33640

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: AB hydrolase superfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: yvaM (according to DBTBS)
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Kentaro Hayashi, Tsukahara Kensuke, Kazuo Kobayashi, Naotake Ogasawara, Mitsuo Ogura
Bacillus subtilis RghR (YvaN) represses rapG and rapH, which encode inhibitors of expression of the srfA operon.
Mol Microbiol: 2006, 59(6);1714-29
[PubMed:16553878] [WorldCat.org] [DOI] (P p)