Difference between revisions of "YtpR"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sftA]]'', ''[[ytpQ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sftA]]'', ''[[ytpQ]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29820 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29820 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ytpR_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ytpR_context.gif]]

Revision as of 11:02, 14 May 2013

  • Description: similar to Phe-tRNA synthetase (beta subunit)

Gene name ytpR
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ytpR
MW, pI 21 kDa, 4.266
Gene length, protein length 603 bp, 201 aa
Immediate neighbours sftA, ytpQ
Sequences Protein DNA DNA_with_flanks
Genetic context
YtpR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
500px















Categories containing this gene/protein

translation

This gene is a member of the following regulons

Spx regulon

The gene

Basic information

  • Locus tag: BSU29820

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Peter Zuber, Shefali Chauhan, Praseeda Pilaka, Michiko M Nakano, Sairam Gurumoorthy, Ann A Lin, Skye M Barendt, Bui Khanh Chi, Haike Antelmann, Ulrike Mäder
Phenotype enhancement screen of a regulatory spx mutant unveils a role for the ytpQ gene in the control of iron homeostasis.
PLoS One: 2011, 6(9);e25066
[PubMed:21949854] [WorldCat.org] [DOI] (I p)