ytiB

ytiB
168

similar to carbonic anhydrase

locus
BSU_30690
Molecular weight
20.97 kDa
pI
6.17
Protein length
Gene length
function
unknown
product
unknown
essential
no
ec
4.2.1.1
synonyms
ytiB

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0288 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,138,321 → 3,138,884
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The protein
Catalyzed reaction/ biological activity
H+ + hydrogencarbonate --> CO2 + H2O (according to UniProt)
Protein family
beta-class carbonic anhydrase family (with [protein|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA] and [protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF], according to UniProt)
Structure
[PDB|1G5C] (from Methanobacterium thermoautotrophicum, 34% identity) [pubmed|11096105]
[AF|O34872]
Paralogous protein(s)
[protein|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]
[protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF], Array
Expression and Regulation
Operons
genes
[gene|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]-[gene|FF61DC6CA162EEC191CDFC802E721FCBD32EC098|luxS]
description
[pubmed|22383849]
sigma factors
[protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB]: sigma factor, [Pubmed|26577401], in [regulon|protein:580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB regulon]
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[gene|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]->[gene|FF61DC6CA162EEC191CDFC802E721FCBD32EC098|luxS]

2024-02-07 17:42:35

Bzhu

48

75926799ff2de1c9324aa7def16e549e605f52eb

BC92809DA5580B1417FA8A9D54A26A0EA0ADDFD9

Biological materials
Mutant
MGNA-A293 (ytiB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/293 NBRP B. subtilis, Japan]
BKE30690 (Δ[gene|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE30690 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTTCGTTGTCCCTTTCT,  downstream forward: _UP4_CTTATCGTAAACGGTTATAA
BKK30690 (Δ[gene|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK30690 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTTCGTTGTCCCTTTCT,  downstream forward: _UP4_CTTATCGTAAACGGTTATAA
References
26577401,11096105

F942C0F4618FACEF35ACA629355BAC288556E7B6

Page visits: 2007

Time of last update: 2024-03-28 15:14:38

Author of last update: Melvin.boenninger