Difference between revisions of "YtaF"
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| − | * '''Description:''' sporulation protein <br/><br/> | + | * '''Description:''' [[sporulation]] protein <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || [[sporulation]] protein |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown | ||
| Line 38: | Line 38: | ||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| − | {{SubtiWiki category|[[sporulation proteins]]}} | + | {{SubtiWiki category|[[sporulation proteins]]}}, |
| + | {{SubtiWiki category|[[membrane proteins]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[SigE regulon]]}} | |
=The gene= | =The gene= | ||
| Line 50: | Line 51: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| − | + | * strongly reduced [[sporulation]] efficiency (10% as compared to wild type) {{PubMed|23396918}} | |
| + | * block in stage III of [[sporulation]] (engulfment of the forespore) {{PubMed|23396918}} | ||
=== Database entries === | === Database entries === | ||
| Line 58: | Line 60: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
| Line 76: | Line 76: | ||
* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''Domains:''' 4 potential transmembrane domains {{PubMed|23396918}} |
* '''Modification:''' | * '''Modification:''' | ||
| Line 106: | Line 106: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytaF_2971531_2972163_-1 ytaF] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytaF_2971531_2972163_-1 ytaF] {{PubMed|22383849}} | ||
| − | * '''[[Sigma factor]]:''' | + | * '''[[Sigma factor]]:''' [[SigE]] {{PubMed|23396918}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed|23396918}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
Revision as of 10:38, 13 February 2013
- Description: sporulation protein
| Gene name | ytaF |
| Synonyms | |
| Essential | no |
| Product | sporulation protein |
| Function | unknown |
| Gene expression levels in SubtiExpress: ytaF | |
| MW, pI | 17 kDa, 9.791 |
| Gene length, protein length | 477 bp, 159 aa |
| Immediate neighbours | ytaG, mutM |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
sporulation proteins, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU29070
Phenotypes of a mutant
- strongly reduced sporulation efficiency (10% as compared to wild type) PubMed
- block in stage III of sporulation (engulfment of the forespore) PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains: 4 potential transmembrane domains PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: C0SP79
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Ana B Abecasis, Mónica Serrano, Renato Alves, Leonor Quintais, José B Pereira-Leal, Adriano O Henriques
A genomic signature and the identification of new sporulation genes.
J Bacteriol: 2013, 195(9);2101-15
[PubMed:23396918]
[WorldCat.org]
[DOI]
(I p)
