Difference between revisions of "YrrK"

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=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
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* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
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* '''[[Domains]]:'''  
  
* '''Modification:'''
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* '''Modification:'''  
  
* '''Cofactor(s):'''
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* '''[[Cofactors]]:'''
  
* '''Effectors of protein activity:'''
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* '''Effectors of protein activity:'''  
  
* '''Interactions:'''
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* '''[[SubtInteract|Interactions]]:'''
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* '''[[Localization]]:'''  
  
* '''Localization:'''
 
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrrK_2797399_2797815_-1 yrrK] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrrK_2797399_2797815_-1 yrrK] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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=References=
 
=References=
 
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<pubmed> 25545592 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 12:23, 26 March 2015

  • Description: unknown

Gene name yrrK
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yrrK
MW, pI 15 kDa, 5.325
Gene length, protein length 414 bp, 138 aa
Immediate neighbours yrzB, yrzL
Sequences Protein DNA DNA_with_flanks
Genetic context
YrrK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YrrK expression.png















Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU27390

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: yqgF HJR family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:


Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • number of protein molecules per cell (complex medium with amino acids, without glucose): 251 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tatsuaki Kurata, Shinobu Nakanishi, Masayuki Hashimoto, Masato Taoka, Yukiko Yamazaki, Toshiaki Isobe, Jun-Ichi Kato
Novel essential gene Involved in 16S rRNA processing in Escherichia coli.
J Mol Biol: 2015, 427(4);955-965
[PubMed:25545592] [WorldCat.org] [DOI] (I p)