yqxD

yqxD
168

unknown

locus
BSU_25230
Molecular weight
22.40 kDa
pI
7.17
Protein length
Gene length
function
unknown
product
unknown
essential
no
ec
null
synonyms
yqxD, yqfM

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1671 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,603,373  2,603,867
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The protein
Protein family
UPF0178 family (single member, according to UniProt)
Structure
[AF|P17868]
Expression and Regulation
Operons
genes
[gene|398924959D6C82918617C4B050F72D5E78EE12E9|yqxD]-[gene|F7B53E8AC92DAD15544C6208C2A5B41BABA73D6D|dnaG]-[gene|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]
description
[Pubmed|3298998]
regulation
enzymatic activity is inhibited by (p)ppGpp during the 'stringent response
regulatory mechanism
[protein|2C54FE2ADC82FF414D732018C90649D477A925AD|spo0A]: repression, [Pubmed|14651647], in [regulon|protein:2C54FE2ADC82FF414D732018C90649D477A925AD|spo0A regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|3298998], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
[protein|DC3449D5F195E5C2E9E14FEC95396C8F1FDF73B4|sigH]: sigma factor, [Pubmed|3127379], in [regulon|protein:DC3449D5F195E5C2E9E14FEC95396C8F1FDF73B4|sigH regulon]
additional information
An [wiki|ncRNA|antisense RNA] is predicted for [gene|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA] [PubMed|20525796]
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[gene|398924959D6C82918617C4B050F72D5E78EE12E9|yqxD]→[gene|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]

2024-03-14 00:02:57

TPed

131

345BE3439F4414F1DA2FD49B273925B808601AB7

E9F2D1769ACB2AF65C67D8854D4F58BC49368B55

Biological materials
Mutant
MGNA-C491 (yqxD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2489 NBRP B. subtilis, Japan]
BKE25230 ([gene|398924959D6C82918617C4B050F72D5E78EE12E9|yqxD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE25230 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTAAACTCCTGCATAAAA,  downstream forward: _UP4_TAAAGCATCGAATAATGTAC
BKK25230 ([gene|398924959D6C82918617C4B050F72D5E78EE12E9|yqxD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK25230 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTAAACTCCTGCATAAAA,  downstream forward: _UP4_TAAAGCATCGAATAATGTAC
References
Reviews
36882621
Original Publications
3298998,10411753,3127379

398924959D6C82918617C4B050F72D5E78EE12E9

Page visits: 1798

Time of last update: 2024-03-28 20:30:10

Author of last update: Jstuelk