yqjB

168

putative sporulation-specific L,D-transpeptidase

locus: BSU_23940

Molecular weight: 19.55 kDa

pI: 5.27

Protein length: 176 aa

Gene length: 531 bp

function: unknown

product: putative L,D-transpeptidase

essential: no

synonyms: yqjB

List of homologs in different organisms, belongs to COG1376 (Galperin et al., 2021)

Gene

Coordinates: 2,488,953  2,489,483

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The protein

Protein family

• YkuD family (with [protein|456AF184261976FAA73359E81443F7035F457D07|yciB] and [protein|6F256986E591DB82974A7F54EB1CE0C024A6F63B|ldt], according to UniProt)

Structure

• [PDB|4A1I] ([protein|6F256986E591DB82974A7F54EB1CE0C024A6F63B|ldt], 41% identity)
• [AF|P54539]

Paralogous protein(s)

• [protein|6F256986E591DB82974A7F54EB1CE0C024A6F63B|ldt]

[wiki|Localization]

• contains a signal peptide for secretion (according to UniProt)

Biological materials

Mutant

• MGNA-C385 (yqjB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2383 NBRP B. subtilis, Japan]
• BKE23940 ([gene|293794B65B9EEB7F049138F73893303BABFB9A2A|yqjB]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE23940 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATAAGCTCCTCCTTTTTCA,  downstream forward: _UP4_TAAGGCGCCTGCTTTTTTAT
• BKK23940 ([gene|293794B65B9EEB7F049138F73893303BABFB9A2A|yqjB]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK23940 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATAAGCTCCTCCTTTTTCA,  downstream forward: _UP4_TAAGGCGCCTGCTTTTTTAT