Difference between revisions of "YqiQ"

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(Extended information on the protein)
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Revision as of 19:40, 16 February 2014

  • Description: methylisocitrate lyase

Gene name yqiQ
Synonyms prpB
Essential no
Product methylisocitrate lyase
Function mother cell metabolism
Gene expression levels in SubtiExpress: yqiQ
Metabolic function and regulation of this protein in SubtiPathways:
yqiQ
MW, pI 32 kDa, 5.279
Gene length, protein length 903 bp, 301 aa
Immediate neighbours yqzF, mmgE
Sequences Protein DNA DNA_with_flanks
Genetic context
YqiQ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YqiQ expression.png




























Categories containing this gene/protein

sporulation proteins, membrane proteins, poorly characterized/ putative enzymes

This gene is a member of the following regulons

CcpA regulon, SigE regulon

The gene

Basic information

  • Locus tag: BSU24120

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate = pyruvate + succinate (according to Swiss-Prot)
  • Protein family: Methylisocitrate lyase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • Structure: 1MUM (enzyme of E. coli), 3KZ2 (the enzyme from B. anthracis)
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
    • expressed early during sporulation in the mother cell (SigE) PubMed
    • repressed by glucose (CcpA) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

Clemens Grimm, Andreas Evers, Matthias Brock, Claudia Maerker, Gerhard Klebe, Wolfgang Buckel, Klaus Reuter
Crystal structure of 2-methylisocitrate lyase (PrpB) from Escherichia coli and modelling of its ligand bound active centre.
J Mol Biol: 2003, 328(3);609-21
[PubMed:12706720] [WorldCat.org] [DOI] (P p)

E M Bryan, B W Beall, C P Moran
A sigma E dependent operon subject to catabolite repression during sporulation in Bacillus subtilis.
J Bacteriol: 1996, 178(16);4778-86
[PubMed:8759838] [WorldCat.org] [DOI] (P p)