Difference between revisions of "YqaJ"

From SubtiWiki
Jump to: navigation, search
(This gene is a member of the following regulons)
Line 106: Line 106:
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
 +
** A [[ncRNA]] is predicted between ''[[yqaJ]]'' and ''[[yqaI]]'' {{PubMed|20525796}}
  
 
=Biological materials =
 
=Biological materials =
Line 126: Line 127:
  
 
=References=
 
=References=
<pubmed> 20889742 </pubmed>  
+
<pubmed> 20889742 20525796</pubmed>  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 18:12, 4 May 2011

  • Description: similar to phage-related protein, skin element

Gene name yqaJ
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 36 kDa, 5.943
Gene length, protein length 957 bp, 319 aa
Immediate neighbours yqaK, yqaI
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YqaJ context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

Skin element

This gene is a member of the following regulons

SknR regulon

The gene

Basic information

  • Locus tag: BSU26290

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • not expressed during normal growth (SknR) PubMed
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tatsu Kimura, Yukie Amaya, Kazuo Kobayashi, Naotake Ogasawara, Tsutomu Sato
Repression of sigK intervening (skin) element gene expression by the CI-like protein SknR and effect of SknR depletion on growth of Bacillus subtilis cells.
J Bacteriol: 2010, 192(23);6209-16
[PubMed:20889742] [WorldCat.org] [DOI] (I p)

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)