Difference between revisions of "YqaJ"

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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaJ_2696030_2696989_-1 yqaJ] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaJ_2696030_2696989_-1 yqaJ] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigA]]  {{PubMed|20889742}}  
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* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|20889742}}  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 20:07, 7 July 2013

  • Description: similar to phage-related protein, skin element

Gene name yqaJ
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yqaJ
MW, pI 36 kDa, 5.943
Gene length, protein length 957 bp, 319 aa
Immediate neighbours yqaK, yqaI
Sequences Protein DNA DNA_with_flanks
Genetic context
YqaJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YqaJ expression.png















Categories containing this gene/protein

Skin element

This gene is a member of the following regulons

SknR regulon

The gene

Basic information

  • Locus tag: BSU26290

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • not expressed during normal growth (SknR) PubMed
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tatsu Kimura, Yukie Amaya, Kazuo Kobayashi, Naotake Ogasawara, Tsutomu Sato
Repression of sigK intervening (skin) element gene expression by the CI-like protein SknR and effect of SknR depletion on growth of Bacillus subtilis cells.
J Bacteriol: 2010, 192(23);6209-16
[PubMed:20889742] [WorldCat.org] [DOI] (I p)

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)