Difference between revisions of "YpjD"

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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22500 ypjD]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22500 ypjD]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/lys_threo.html Lys, Thr]'''
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=ypjD ypjD]'''
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 4.952   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 4.952   

Revision as of 11:04, 7 January 2014

  • Description: putative pyrophosphatase

Gene name ypjD
Synonyms jojD
Essential no
Product putative pyrophosphatase
Function unknown
Gene expression levels in SubtiExpress: ypjD
Metabolic function and regulation of this protein in SubtiPathways:
ypjD
MW, pI 12 kDa, 4.952
Gene length, protein length 333 bp, 111 aa
Immediate neighbours dapB, ypjC
Sequences Protein DNA DNA_with_flanks
Genetic context
YpjD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YpjD expression.png















Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

Spx regulon


The gene

Basic information

  • Locus tag: BSU22500

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: 6-phosphogluconate dehydrogenase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by diamide stess (thiol depletion) (Spx) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Operon and expression