Difference between revisions of "YphA"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[seaA]]'', ''[[ypzI]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[seaA]]'', ''[[ypzI]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22860 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22860 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yphA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yphA_context.gif]]

Revision as of 10:35, 14 May 2013

  • Description: unknown

Gene name yphA
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yphA
MW, pI 22 kDa, 9.252
Gene length, protein length 597 bp, 199 aa
Immediate neighbours seaA, ypzI
Sequences Protein DNA DNA_with_flanks
Genetic context
YphA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YphA expression.png
























Categories containing this gene/protein

sporulation proteins, membrane proteins

This gene is a member of the following regulons

SigF regulon

The gene

Basic information

  • Locus tag: BSU22860

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed early during sporulation in the forespore (SigF) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

A Decatur, R Losick
Identification of additional genes under the control of the transcription factor sigma F of Bacillus subtilis.
J Bacteriol: 1996, 178(16);5039-41
[PubMed:8759874] [WorldCat.org] [DOI] (P p)