Difference between revisions of "YotH"

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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''[[yosX]]-[[yotB]]-[[yotC]]-[[yotD]]-[[yotE]]-[[yotF]]-[[yotG]]-[[yotH]]-[[yotI]]-[[yotJ]]-[[yotK]]-[[yotM]]-[[sprB]]'' {{PubMed|25299644}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yotH_2154077_2154250_-1 yotH] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yotH_2154077_2154250_-1 yotH] {{PubMed|22383849}}
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
 +
** [[SigA]] {{PubMed|25299644}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** induced by MMC addition to vegetative cells {{PubMed|25299644}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
Line 136: Line 138:
  
 
=References=
 
=References=
 
+
<pubmed>,9387222, 25299644</pubmed>
<pubmed>,9387222, </pubmed>
 
 
 
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 09:17, 10 October 2014

  • Description: similar to propionyl-CoA carboxylase

Gene name yotH
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yotH
MW, pI 6 kDa, 5.386
Gene length, protein length 171 bp, 57 aa
Immediate neighbours yotI, yotG
Sequences Protein DNA DNA_with_flanks
Genetic context
YotH context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YotH expression.png















Categories containing this gene/protein

SP-beta prophage, poorly characterized/ putative enzymes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU19880

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by MMC addition to vegetative cells PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Kimihiro Abe, Yuta Kawano, Keito Iwamoto, Kenji Arai, Yuki Maruyama, Patrick Eichenberger, Tsutomu Sato
Developmentally-regulated excision of the SPβ prophage reconstitutes a gene required for spore envelope maturation in Bacillus subtilis.
PLoS Genet: 2014, 10(10);e1004636
[PubMed:25299644] [WorldCat.org] [DOI] (I e)

Valentina Tosato, Alessandra M Albertini, Michela Zotti, Sabrina Sonda, Carlo V Bruschi
Sequence completion, identification and definition of the fengycin operon in Bacillus subtilis 168.
Microbiology (Reading): 1997, 143 ( Pt 11);3443-3450
[PubMed:9387222] [WorldCat.org] [DOI] (P p)