Difference between revisions of "YorK"

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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
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* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:'''
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* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yorK_2179526_2181256_-1 yorK] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yorK_2179526_2181256_-1 yorK] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 19:46, 26 March 2013

  • Description: single-strand DNA-specific exonuclease

Gene name yorK
Synonyms
Essential no
Product single-strand DNA-specific exonuclease
Function unknown
Gene expression levels in SubtiExpress: yorK
Interactions involving this protein in SubtInteract: YorK
MW, pI 65 kDa, 6.562
Gene length, protein length 1728 bp, 576 aa
Immediate neighbours yorL, yorJ
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YorK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YorK expression.png















Categories containing this gene/protein

DNA repair/ recombination, SP-beta prophage, phosphoproteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU20350

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: RecJ family
  • Paralogous protein(s): YrvE

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification: phosphorylation on Tyr-473 PubMed
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References